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EDP03443 protein (Chlamydomonas reinhardtii) - STRING interaction network
"EDP03443" - valyl-tRNA synthetase in Chlamydomonas reinhardtii
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDP03443valyl-tRNA synthetase (574 aa)    
Predicted Functional Partners:
EDP03442
Predicted protein (86 aa)
 
        0.982
EDP04076
Predicted protein (962 aa)
   
 
 
0.931
EDP06926
Predicted protein (796 aa)
   
 
  0.926
EDO97327
Predicted protein (403 aa)
     
 
  0.888
EDO97326
Predicted protein (246 aa)
     
 
  0.863
EDP06649
Predicted protein (353 aa)
   
   
  0.863
EDP09046
Predicted protein (57 aa)
     
 
  0.855
TRM2C
tRNA (uracil-5-)-methyltransferase (364 aa)
   
   
  0.844
RPL35
Ribosomal protein L35 (130 aa)
     
 
  0.837
TRM2B
tRNA (uracil-5)-methyltransferase (206 aa)
   
   
  0.834
Your Current Organism:
Chlamydomonas reinhardtii
NCBI taxonomy Id: 3055
Other names: C. reinhardtii, Chlamydomonadaceae, Chlamydomonadales, Chlamydomonas, Chlamydomonas reinhardtii, Chlamydomonas reinhardtii P.A.Dangeard, Chlamydomonas smithii, Chlamydomonas smithii R.W.Howshaw & H.Ettl, Chlorophyceae, Volvocales, Volvocida
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