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EDP03518 protein (Chlamydomonas reinhardtii) - STRING interaction network
"EDP03518" - Predicted protein in Chlamydomonas reinhardtii
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDP03518Predicted protein (673 aa)    
Predicted Functional Partners:
EDP09484
Predicted protein (208 aa)
     
 
  0.966
EDP06363
Phosphopantothenoylcysteine decarboxylase (361 aa)
     
 
  0.966
PANC
Pantothenate synthetase (199 aa)
         
  0.958
EDP03638
Predicted protein (171 aa)
     
  0.947
CGL14
Protein of pantothenate kinase family (441 aa)
         
0.817
EDP08868
Predicted protein (213 aa)
     
 
  0.496
EDP05848
Predicted protein (223 aa)
     
 
  0.496
EDP01923
Predicted protein; Component of the U1 snRNP, which is essential for recognition of the pre-mRNA 5’ splice-site and the subsequent assembly of the spliceosome. U1-C is directly involved in initial 5’ splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5’ splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates E complex formation by stabilizing the base pairing of the 5’ end of the U1 snRNA and the 5’ splice-site region (154 aa)
           
  0.424
EDP07732
Predicted protein (336 aa)
           
  0.420
EDO99575
Predicted protein (421 aa)
     
        0.412
Your Current Organism:
Chlamydomonas reinhardtii
NCBI taxonomy Id: 3055
Other names: C. reinhardtii, Chlamydomonadaceae, Chlamydomonadales, Chlamydomonas, Chlamydomonas reinhardtii, Chlamydomonas reinhardtii P.A.Dangeard, Chlamydomonas smithii, Chlamydomonas smithii R.W.Howshaw & H.Ettl, Chlorophyceae, Volvocales, Volvocida
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