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EDP03543 protein (Chlamydomonas reinhardtii) - STRING interaction network
"EDP03543" - RabGAP/TBC protein in Chlamydomonas reinhardtii
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDP03543RabGAP/TBC protein (302 aa)    
Predicted Functional Partners:
EDP07834
Predicted protein (1059 aa)
     
   
  0.772
EDP08557
Predicted protein (200 aa)
           
  0.686
EDO98198
Predicted protein (252 aa)
           
  0.686
EDO97492
Predicted protein (148 aa)
     
   
  0.654
RABG1
GTP-binding protein YPTC5; Protein transport. Probably involved in vesicular traffic (By similarity) (206 aa)
     
 
  0.648
EDP04531
TBC1 domain protein (738 aa)
       
 
  0.600
THG1
tRNA(His) guanylyltransferase; Adds a GMP to the 5’-end of tRNA(His) after transcription and RNase P cleavage (258 aa)
           
  0.461
RABA1
Ras-related protein YPTC6 (216 aa)
       
 
  0.456
RABL2A
Small rab-related GTPase (229 aa)
       
 
  0.456
EDO99791
VID72-domain protein (600 aa)
     
   
  0.452
Your Current Organism:
Chlamydomonas reinhardtii
NCBI taxonomy Id: 3055
Other names: C. reinhardtii, Chlamydomonas reinhardtii, Chlamydomonas reinhardtii P.A.Dangeard, Chlamydomonas smithii, Chlamydomonas smithii R.W.Howshaw & H.Ettl, SAG 53.72 [[Chlamydomonas smithii]], SAG 54.72 [[Chlamydomonas smithii]], UTEX 90
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