STRINGSTRING
BIOF protein (Chlamydomonas reinhardtii) - STRING interaction network
"BIOF" - 7-keto-8-aminopelargonic acid synthase in Chlamydomonas reinhardtii
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BIOF7-keto-8-aminopelargonic acid synthase (328 aa)    
Predicted Functional Partners:
BIOA
Diaminopelargonic acid synthase (819 aa)
   
 
  0.993
BIOB
Biotin synthase (58 aa)
   
   
  0.882
TPK1
Thiamine pyrophosphokinase (267 aa)
     
   
  0.814
EDP09222
Quinoprotein (951 aa)
           
  0.801
HYDEF
Iron hydrogenase assembly protein (1151 aa)
   
   
  0.721
EDP08314
Predicted protein (315 aa)
   
  0.689
EDP00336
Predicted protein (170 aa)
   
  0.681
EDP09115
Predicted protein (742 aa)
   
  0.666
EDP08299
Predicted protein (165 aa)
   
   
  0.661
EDP09410
Predicted protein (665 aa)
     
  0.633
Your Current Organism:
Chlamydomonas reinhardtii
NCBI taxonomy Id: 3055
Other names: C. reinhardtii, Chlamydomonadaceae, Chlamydomonadales, Chlamydomonas, Chlamydomonas reinhardtii, Chlamydomonas reinhardtii P.A.Dangeard, Chlamydomonas smithii, Chlamydomonas smithii R.W.Howshaw & H.Ettl, Chlorophyceae, Volvocales, Volvocida
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