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PRP6 protein (Chlamydomonas reinhardtii) - STRING interaction network
"PRP6" - Splicing factor, component of the U4/U6-U5 snRNP complex in Chlamydomonas reinhardtii
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PRP6Splicing factor, component of the U4/U6-U5 snRNP complex (947 aa)    
Predicted Functional Partners:
EDO98006
Nuclear pre-mRNA splicing factor, component of splicing factor 3b (1085 aa)
     
  0.996
EDO97595
Nuclear pre-mRNA splicing factor, component of splicing factor 3b (1078 aa)
     
  0.994
EDP00856
Predicted protein (456 aa)
     
  0.994
PRP8
Splicing factor, component of the U5 snRNP and of the spliceosome (2346 aa)
     
  0.993
EDO96746
Nuclear pre-mRNA splicing factor, component of splicing factor 3b (444 aa)
     
  0.993
SPL5
pre-mRNA-splicing factor (488 aa)
     
  0.992
SPL2
Splicing factor 3a, subunit 2 (287 aa)
     
  0.991
SMP1
Small nuclear ribonucleoprotein (127 aa)
       
  0.991
SPL3
SF3A3 splicing factor 3a, subunit 3 (508 aa)
     
  0.991
SPL1
SF3A1 splicing factor 3a, subunit 1 (400 aa)
     
  0.990
Your Current Organism:
Chlamydomonas reinhardtii
NCBI taxonomy Id: 3055
Other names: C. reinhardtii, Chlamydomonadaceae, Chlamydomonadales, Chlamydomonas, Chlamydomonas reinhardtii, Chlamydomonas reinhardtii P.A.Dangeard, Chlamydomonas smithii, Chlamydomonas smithii R.W.Howshaw & H.Ettl, Chlorophyceae, Volvocales, Volvocida
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