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EDP03889 protein (Chlamydomonas reinhardtii) - STRING interaction network
"EDP03889" - Predicted protein in Chlamydomonas reinhardtii
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDP03889Predicted protein (236 aa)    
Predicted Functional Partners:
SMP6A
U6 small ribonucleoprotein F; Probable common Sm protein, is found in U1 and U2 snRNPs and may be part of the spliceosome (89 aa)
     
 
  0.939
LSM2
Sm-D1 protein (93 aa)
     
      0.937
SMP8
Sm protein (97 aa)
     
 
  0.904
SPL3
SF3A3 splicing factor 3a, subunit 3 (508 aa)
     
 
  0.892
SMP6B
U6 snRNA-associated Sm-like protein LSm4 (134 aa)
     
 
  0.887
EDO96746
Nuclear pre-mRNA splicing factor, component of splicing factor 3b (444 aa)
     
      0.845
PRP6
Splicing factor, component of the U4/U6-U5 snRNP complex (947 aa)
     
      0.840
EDO98295
Predicted protein (142 aa)
     
 
  0.838
EDO97595
Nuclear pre-mRNA splicing factor, component of splicing factor 3b (1078 aa)
     
 
  0.831
SMP1
Small nuclear ribonucleoprotein (127 aa)
     
      0.831
Your Current Organism:
Chlamydomonas reinhardtii
NCBI taxonomy Id: 3055
Other names: C. reinhardtii, Chlamydomonadaceae, Chlamydomonadales, Chlamydomonas, Chlamydomonas reinhardtii, Chlamydomonas reinhardtii P.A.Dangeard, Chlamydomonas smithii, Chlamydomonas smithii R.W.Howshaw & H.Ettl, Chlorophyceae, Volvocales, Volvocida
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