STRINGSTRING
VPS23 protein (Chlamydomonas reinhardtii) - STRING interaction network
"VPS23" - Subunit of the ESCRT-I complex in Chlamydomonas reinhardtii
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VPS23Subunit of the ESCRT-I complex (454 aa)    
Predicted Functional Partners:
VPS28
Subunit of the ESCRT-I complex (225 aa)
     
  0.997
VPS37
Subunit of the ESCRT-I complex (342 aa)
     
  0.989
VPS36
Subunit of ESCRT-II complex (701 aa)
     
  0.953
VPS4
AAA-ATPase of VPS4/SKD1 family (436 aa)
     
  0.941
EDO97226
Programmed cell death protein 6-interacting protein (801 aa)
     
  0.880
SNF7
Component of the ESCRT-III complex (222 aa)
     
  0.842
VPS60
Subunit of the ESCRT-III complex (166 aa)
     
 
  0.826
UBQ4
Ubiquitin (242 aa)
     
  0.819
UBQ3
Bi-ubiquitin (244 aa)
     
  0.818
VPS26
Subunit of retromer complex (320 aa)
     
   
  0.815
Your Current Organism:
Chlamydomonas reinhardtii
NCBI taxonomy Id: 3055
Other names: C. reinhardtii, Chlamydomonadaceae, Chlamydomonadales, Chlamydomonas, Chlamydomonas reinhardtii, Chlamydomonas reinhardtii P.A.Dangeard, Chlamydomonas smithii, Chlamydomonas smithii R.W.Howshaw & H.Ettl, Chlorophyceae, Volvocales, Volvocida
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