STRINGSTRING
LCID protein (Chlamydomonas reinhardtii) - STRING interaction network
"LCID" - Limiting CO2 inducible protein in Chlamydomonas reinhardtii
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LCIDLimiting CO2 inducible protein (478 aa)    
Predicted Functional Partners:
CCP2
low-CO2-inducible chloroplast envelope protein (355 aa)
     
   
  0.872
LCI1
low-CO2-inducible membrane protein (192 aa)
           
  0.700
CCP1
low-CO2-inducible chloroplast envelope protein (358 aa)
           
  0.640
CAH6
Carbonic anhydrase 6; Reversible hydration of carbon dioxide (264 aa)
           
  0.579
HLA3
ABC transporter (1082 aa)
           
  0.578
CCM1
Regulator of CO2-responsive genes (699 aa)
           
  0.578
CAH8
Carbonic anhydrase 8; Reversible hydration of carbon dioxide (333 aa)
           
  0.575
CAH3
Carbonic anhydrase 3 (310 aa)
           
  0.574
NAR1.2
Anion transporter (336 aa)
     
   
  0.545
NAR5
Nitrate transporter (628 aa)
     
        0.513
Your Current Organism:
Chlamydomonas reinhardtii
NCBI taxonomy Id: 3055
Other names: C. reinhardtii, Chlamydomonadaceae, Chlamydomonadales, Chlamydomonas, Chlamydomonas reinhardtii, Chlamydomonas reinhardtii P.A.Dangeard, Chlamydomonas smithii, Chlamydomonas smithii R.W.Howshaw & H.Ettl, Chlorophyceae, Volvocales, Volvocida
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