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DEH1 protein (Chlamydomonas reinhardtii) - STRING interaction network
"DEH1" - Cytoplasmic DExD/H-box RNA helicase in Chlamydomonas reinhardtii
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DEH1Cytoplasmic DExD/H-box RNA helicase (405 aa)    
Predicted Functional Partners:
EDP02683
Predicted protein (466 aa)
     
  0.991
EDP03984
Predicted protein (119 aa)
     
  0.974
LSM1
Sm protein LSm1 (126 aa)
     
  0.957
DCP2
Decapping enzyme complex catalytic component (233 aa)
     
  0.955
NOT1
Component of CCR4-NOT transcriptional regulator complex (1440 aa)
     
 
  0.953
LSM7
Small nuclear riboprotein, U6 sm-like protein (109 aa)
     
  0.952
SMP6A
U6 small ribonucleoprotein F; Probable common Sm protein, is found in U1 and U2 snRNPs and may be part of the spliceosome (89 aa)
     
  0.945
SMP6B
U6 snRNA-associated Sm-like protein LSm4 (134 aa)
     
  0.942
LSM2
Sm-D1 protein (93 aa)
       
  0.942
SMP9
Small nuclear ribonucleoprotein Sm D1 (114 aa)
       
  0.882
Your Current Organism:
Chlamydomonas reinhardtii
NCBI taxonomy Id: 3055
Other names: C. reinhardtii, Chlamydomonadaceae, Chlamydomonadales, Chlamydomonas, Chlamydomonas reinhardtii, Chlamydomonas reinhardtii P.A.Dangeard, Chlamydomonas smithii, Chlamydomonas smithii R.W.Howshaw & H.Ettl, Chlorophyceae, Volvocales, Volvocida
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