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EDP04348 protein (Chlamydomonas reinhardtii) - STRING interaction network
"EDP04348" - Predicted protein in Chlamydomonas reinhardtii
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDP04348Predicted protein (772 aa)    
Predicted Functional Partners:
MGO1
Mago nashi-like protein (148 aa)
     
  0.801
RBM8A
RNA binding motif protein (144 aa)
     
  0.793
EDO98584
Predicted protein; Catalytic subunit of the tRNA-splicing ligase complex that acts by directly joining spliced tRNA halves to mature-sized tRNAs by incorporating the precursor-derived splice junction phosphate into the mature tRNA as a canonical 3’,5’- phosphodiester. May act as an RNA ligase with broad substrate specificity, and may function toward other RNAs (By similarity) (476 aa)
     
  0.791
PNP1
Polyribonucleotide phosphorylase PNPase (599 aa)
   
 
  0.781
EDO96956
Predicted protein (632 aa)
   
  0.773
EIF2Ab
Eukaryotic initiation factor (353 aa)
     
  0.770
REF1
RNA export factor (137 aa)
     
  0.764
EDP04108
Predicted protein (2689 aa)
   
  0.720
CWC22
Cwc22 pre-mRNA splicing factor (592 aa)
     
  0.711
EIF5Ba
Eukaryotic initiation factor (1651 aa)
   
  0.697
Your Current Organism:
Chlamydomonas reinhardtii
NCBI taxonomy Id: 3055
Other names: C. reinhardtii, Chlamydomonadaceae, Chlamydomonadales, Chlamydomonas, Chlamydomonas reinhardtii, Chlamydomonas reinhardtii P.A.Dangeard, Chlamydomonas smithii, Chlamydomonas smithii R.W.Howshaw & H.Ettl, Chlorophyceae, Volvocales, Volvocida
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