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RABA1 protein (Chlamydomonas reinhardtii) - STRING interaction network
"RABA1" - Small rab-related GTPase in Chlamydomonas reinhardtii
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RABA1Small rab-related GTPase (216 aa)    
Predicted Functional Partners:
EDP05127
Smilar to phosphatidylinositol 3-or 4-kinase (1431 aa)
       
  0.970
GDIC1
Rab GDP dissociation inhibitor protein (442 aa)
     
  0.967
SEC5
Component of the exocyst complex (1502 aa)
       
  0.964
EXO70
Component of the exocyst complex (803 aa)
       
  0.946
SYP1
Qa-SNARE Sso1/Syntaxin1, PM-type (311 aa)
     
  0.942
VAMP72
R-SNARE protein, VAMP72-family (219 aa)
     
  0.913
ARL1
ARF-like small GTPase (181 aa)
     
  0.890
VAMP71
R-SNARE protein, VAMP72-family (218 aa)
     
  0.888
ANK28
Predicted protein (501 aa)
     
  0.880
ARFA1A
Small ARF-related GTPase (181 aa)
     
  0.875
Your Current Organism:
Chlamydomonas reinhardtii
NCBI taxonomy Id: 3055
Other names: C. reinhardtii, Chlamydomonadaceae, Chlamydomonadales, Chlamydomonas, Chlamydomonas reinhardtii, Chlamydomonas reinhardtii P.A.Dangeard, Chlamydomonas smithii, Chlamydomonas smithii R.W.Howshaw & H.Ettl, Chlorophyceae, Volvocales, Volvocida
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