STRINGSTRING
PDS1 protein (Chlamydomonas reinhardtii) - STRING interaction network
"PDS1" - Phytoene desaturase in Chlamydomonas reinhardtii
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PDS1Phytoene desaturase (564 aa)    
Predicted Functional Partners:
PSY
Phytoene synthase (382 aa)
 
  0.998
EDO96439
Predicted protein (144 aa)
   
 
  0.979
ZDS1
Zeta-carotene desaturase; Catalyzes the conversion of zeta-carotene to lycopene via the intermediary of neurosporene. It carries out two consecutive desaturations (introduction of double bonds) at positions C-7 and C-7’ (582 aa)
   
 
0.978
EDO99516
Carotenoid isomerase (568 aa)
 
 
  0.875
LCYE
Lycopene epsilon cyclase (583 aa)
     
   
  0.863
GGPS
Geranylgeranyl diphosphate synthase (345 aa)
   
   
  0.842
DXR1
1-deoxy-D-xylulose 5-phosphate reductoisomerase (415 aa)
     
   
  0.759
EDP06129
Farnesyl-diphosphate farnesyltransferase (378 aa)
   
 
  0.739
EDP01276
Predicted protein (558 aa)
 
 
  0.718
NFR1
NADPH-dependent flavin reductase; Component of the cytosolic iron-sulfur (Fe-S) protein assembly (CIA) machinery. Required for the maturation of extramitochondrial Fe-S proteins. Part of an electron transfer chain functioning in an early step of cytosolic Fe-S biogenesis. Transfers electrons from NADPH to the Fe-S cluster of the anamorsin/DRE2 homolog (620 aa)
           
  0.715
Your Current Organism:
Chlamydomonas reinhardtii
NCBI taxonomy Id: 3055
Other names: C. reinhardtii, Chlamydomonadaceae, Chlamydomonadales, Chlamydomonas, Chlamydomonas reinhardtii, Chlamydomonas reinhardtii P.A.Dangeard, Chlamydomonas smithii, Chlamydomonas smithii R.W.Howshaw & H.Ettl, Chlorophyceae, Volvocales, Volvocida
Server load: low (9%) [HD]