STRINGSTRING
EDP05338 protein (Chlamydomonas reinhardtii) - STRING interaction network
"EDP05338" - Protein of receptor mediated endocytosis family in Chlamydomonas reinhardtii
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDP05338Protein of receptor mediated endocytosis family (1482 aa)    
Predicted Functional Partners:
EDP07916
Predicted protein (411 aa)
     
 
  0.685
VPS5A
Subunit of retromer complex (410 aa)
       
 
  0.671
VPS5C
Subunit of retromer complex (747 aa)
     
 
  0.656
EDP09933
Predicted protein (2852 aa)
     
        0.634
SLY1
SM/Sec1-family protein (640 aa)
     
      0.609
EDP04144
Predicted protein (1362 aa)
     
        0.609
EDP09019
Predicted protein (2013 aa)
     
        0.602
EDO98505
Predicted protein (503 aa)
     
        0.597
RABF1
Small rab-related GTPase (202 aa)
       
 
  0.586
EDP04849
Predicted protein (2855 aa)
     
        0.554
Your Current Organism:
Chlamydomonas reinhardtii
NCBI taxonomy Id: 3055
Other names: C. reinhardtii, Chlamydomonadaceae, Chlamydomonadales, Chlamydomonas, Chlamydomonas reinhardtii, Chlamydomonas reinhardtii P.A.Dangeard, Chlamydomonas smithii, Chlamydomonas smithii R.W.Howshaw & H.Ettl, Chlorophyceae, Volvocales, Volvocida
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