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HDS1 protein (Chlamydomonas reinhardtii) - STRING interaction network
"HDS1" - 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase in Chlamydomonas reinhardtii
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HDS11-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase (681 aa)    
Predicted Functional Partners:
IDS1
4-hydroxy-3-methylbut-2-enyl diphosphate reductase (465 aa)
 
  0.994
EDP05431
2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase (207 aa)
 
 
  0.983
DXR1
1-deoxy-D-xylulose 5-phosphate reductoisomerase (415 aa)
 
   
  0.952
CMS
4-diphosphocytidyl-2C-methyl-D-erythritol synthase (319 aa)
 
 
  0.795
DXS1
1-deoxy-D-xylulose 5-phosphate synthase (708 aa)
 
   
  0.790
CMK1
4-diphosphocytidyl-2-C-methyl-D-erythritol kinase (347 aa)
   
   
  0.728
EDP07593
Predicted protein (443 aa)
   
   
  0.719
EDO95991
Predicted protein (79 aa)
   
 
  0.619
PLSB1
Glycerol-3-phosphate acyltransferase (408 aa)
   
   
  0.608
EDO99516
Carotenoid isomerase (568 aa)
     
   
  0.597
Your Current Organism:
Chlamydomonas reinhardtii
NCBI taxonomy Id: 3055
Other names: C. reinhardtii, Chlamydomonadaceae, Chlamydomonadales, Chlamydomonas, Chlamydomonas reinhardtii, Chlamydomonas reinhardtii P.A.Dangeard, Chlamydomonas smithii, Chlamydomonas smithii R.W.Howshaw & H.Ettl, Chlorophyceae, Volvocales, Volvocida
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