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SKP1 protein (Chlamydomonas reinhardtii) - STRING interaction network
"SKP1" - E3 ubiquitin ligase in Chlamydomonas reinhardtii
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SKP1E3 ubiquitin ligase (157 aa)    
Predicted Functional Partners:
RBX1
Ring-box protein (130 aa)
     
  0.997
CUL1
Ubiquitin ligase SCF complex subunit cullin (725 aa)
     
  0.992
CKS1
Cyclin dependent kinase regulatory subunit; Binds to the catalytic subunit of the cyclin dependent kinases and is essential for their biological function (88 aa)
       
  0.991
CUL3
Cullin (744 aa)
     
  0.991
EDP05939
Predicted protein (463 aa)
       
  0.979
EDP05310
Predicted protein (308 aa)
       
  0.979
TRP6
Transient receptor potential ion channel protein (2341 aa)
       
  0.979
EDP09480
Predicted protein (412 aa)
       
  0.977
EDP05145
Predicted protein (487 aa)
       
  0.977
EDP00695
Predicted protein (971 aa)
       
  0.977
Your Current Organism:
Chlamydomonas reinhardtii
NCBI taxonomy Id: 3055
Other names: C. reinhardtii, Chlamydomonadaceae, Chlamydomonadales, Chlamydomonas, Chlamydomonas reinhardtii, Chlamydomonas reinhardtii P.A.Dangeard, Chlamydomonas smithii, Chlamydomonas smithii R.W.Howshaw & H.Ettl, Chlorophyceae, Volvocales, Volvocida
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