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PRP38 protein (Chlamydomonas reinhardtii) - STRING interaction network
"PRP38" - pre-mRNA splicing factor in Chlamydomonas reinhardtii
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PRP38pre-mRNA splicing factor (284 aa)    
Predicted Functional Partners:
HNR1
Heterogeneous nuclear ribonucleoprotein (295 aa)
     
 
  0.903
EDP09659
Casein kinase 2 beta chain, CK2B; Plays a complex role in regulating the basal catalytic activity of the alpha subunit (204 aa)
     
      0.878
SMP1
Small nuclear ribonucleoprotein (127 aa)
     
 
  0.855
EDO97438
Casein kinase 2 alpha chain, CK2A (339 aa)
     
      0.847
EDP09581
Predicted protein (68 aa)
     
      0.843
EDP02936
Predicted protein (365 aa)
     
      0.843
PRP19
Spliceosome component, nuclear pre-mRNA splicing factor (503 aa)
     
 
  0.829
EDP06100
pre-mRNA splicing factor PRP38 family protein (371 aa)
     
 
0.816
RPL36
Ribosomal protein L36, component of cytosolic 80S ribosome and 60S large subunit (98 aa)
     
   
  0.808
EDP06331
Predicted protein (276 aa)
     
 
  0.793
Your Current Organism:
Chlamydomonas reinhardtii
NCBI taxonomy Id: 3055
Other names: C. reinhardtii, Chlamydomonadaceae, Chlamydomonadales, Chlamydomonas, Chlamydomonas reinhardtii, Chlamydomonas reinhardtii P.A.Dangeard, Chlamydomonas smithii, Chlamydomonas smithii R.W.Howshaw & H.Ettl, Chlorophyceae, Volvocales, Volvocida
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