STRINGSTRING
EDP05471 protein (Chlamydomonas reinhardtii) - STRING interaction network
"EDP05471" - SNF2 superfamily protein in Chlamydomonas reinhardtii
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDP05471SNF2 superfamily protein (1061 aa)    
Predicted Functional Partners:
EDP09315
High mobility group protein (552 aa)
     
  0.946
EDP03887
Predicted protein (101 aa)
     
  0.945
EDP00834
Predicted protein (455 aa)
     
  0.904
EDP00599
Nucleosome remodeling factor (418 aa)
     
  0.891
EDP02188
Histone deacetylase (419 aa)
     
  0.884
EDP02864
DNA-directed RNA polymerase III, subunit 2; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (1161 aa)
     
  0.884
TOP2
DNA topoisomerase II; Control of topological states of DNA by transient breakage and subsequent rejoining of DNA strands. Topoisomerase II makes double-strand breaks (1167 aa)
     
  0.879
EDP08347
Histone acetyltransferase (517 aa)
     
  0.855
RPB6
Subunit of DNA-directed RNA polymerase (87 aa)
     
    0.845
SET4
Histone methyltransferase (2983 aa)
     
  0.828
Your Current Organism:
Chlamydomonas reinhardtii
NCBI taxonomy Id: 3055
Other names: C. reinhardtii, Chlamydomonadaceae, Chlamydomonadales, Chlamydomonas, Chlamydomonas reinhardtii, Chlamydomonas reinhardtii P.A.Dangeard, Chlamydomonas smithii, Chlamydomonas smithii R.W.Howshaw & H.Ettl, Chlorophyceae, Volvocales, Volvocida
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