STRINGSTRING
UPF3 protein (Chlamydomonas reinhardtii) - STRING interaction network
UPF3 protein in Chlamydomonas reinhardtii
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
UPF3UPF3 protein (371 aa)    
Predicted Functional Partners:
UPF1
UPF1 protein (800 aa)
     
  0.995
EDP00439
Predicted protein (225 aa)
     
  0.991
UPF2
UPF2 protein (301 aa)
     
  0.991
EDP01462
Predicted protein (624 aa)
     
  0.982
MGO1
Mago nashi-like protein (148 aa)
     
  0.981
EDP05185
Eukaryotic initiation factor 4A-like protein (413 aa)
       
  0.944
EDP03966
Predicted protein (599 aa)
       
  0.944
EDP03946
Predicted protein (96 aa)
       
  0.944
RBM8A
RNA binding motif protein (144 aa)
       
  0.929
EDP09959
RNA helicase (1203 aa)
     
  0.918
Your Current Organism:
Chlamydomonas reinhardtii
NCBI taxonomy Id: 3055
Other names: C. reinhardtii, Chlamydomonadaceae, Chlamydomonadales, Chlamydomonas, Chlamydomonas reinhardtii, Chlamydomonas reinhardtii P.A.Dangeard, Chlamydomonas smithii, Chlamydomonas smithii R.W.Howshaw & H.Ettl, Chlorophyceae, Volvocales, Volvocida
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