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LSM2 protein (Chlamydomonas reinhardtii) - STRING interaction network
"LSM2" - Sm-D1 protein in Chlamydomonas reinhardtii
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LSM2Sm-D1 protein (93 aa)    
Predicted Functional Partners:
LSM5
Sm-E protein (95 aa)
     
  0.998
SMP11
Sm protein (100 aa)
     
  0.998
SMP6A
U6 small ribonucleoprotein F; Probable common Sm protein, is found in U1 and U2 snRNPs and may be part of the spliceosome (89 aa)
     
  0.998
SMP8
Sm protein (97 aa)
     
  0.998
SMP6B
U6 snRNA-associated Sm-like protein LSm4 (134 aa)
     
  0.998
LSM7
Small nuclear riboprotein, U6 sm-like protein (109 aa)
     
  0.998
LSM1
Sm protein LSm1 (126 aa)
     
  0.997
SMP4
Small nuclear ribonucleoprotein Sm D2 (110 aa)
     
  0.990
SMP9
Small nuclear ribonucleoprotein Sm D1 (114 aa)
     
  0.990
SMP3
Small nuclear ribonucleoprotein E (87 aa)
     
  0.988
Your Current Organism:
Chlamydomonas reinhardtii
NCBI taxonomy Id: 3055
Other names: C. reinhardtii, Chlamydomonadaceae, Chlamydomonadales, Chlamydomonas, Chlamydomonas reinhardtii, Chlamydomonas reinhardtii P.A.Dangeard, Chlamydomonas smithii, Chlamydomonas smithii R.W.Howshaw & H.Ettl, Chlorophyceae, Volvocales, Volvocida
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