STRINGSTRING
SHKF1 protein (Chlamydomonas reinhardtii) - STRING interaction network
"SHKF1" - Shikimate kinase in Chlamydomonas reinhardtii
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHKF1Shikimate kinase (327 aa)    
Predicted Functional Partners:
SHKD1
Dehydroquinate dehydratase (554 aa)
   
  0.998
SHKG1
5-enolpyruvylshikimate-3-phosphate synthase (512 aa)
 
 
  0.982
SHKH1
Chorismate synthase (422 aa)
 
  0.974
DHQS
3-dehydroquinate synthase (476 aa)
 
 
  0.956
SHKA1
3-deoxy-D-arabino-heptulosonate 7-phosphate synthetase (502 aa)
         
  0.840
PRD1
Prephenate dehydratase (413 aa)
   
 
  0.836
PRT1
Anthranilate phosphoribosyltransferase (390 aa)
   
   
  0.790
CHM1
Chorismate mutase (347 aa)
   
   
  0.788
ADC1
Aminodeoxychorismate synthase (724 aa)
   
 
  0.774
METH1
Cobalamin-dependent methionine synthase (1242 aa)
       
  0.747
Your Current Organism:
Chlamydomonas reinhardtii
NCBI taxonomy Id: 3055
Other names: C. reinhardtii, Chlamydomonadaceae, Chlamydomonadales, Chlamydomonas, Chlamydomonas reinhardtii, Chlamydomonas reinhardtii P.A.Dangeard, Chlamydomonas smithii, Chlamydomonas smithii R.W.Howshaw & H.Ettl, Chlorophyceae, Volvocales, Volvocida
Server load: low (3%) [HD]