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EDP05831 protein (Chlamydomonas reinhardtii) - STRING interaction network
"EDP05831" - Predicted protein in Chlamydomonas reinhardtii
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDP05831Predicted protein (156 aa)    
Predicted Functional Partners:
ABH1
mRNA cap-binding protein (1134 aa)
     
  0.998
SPL2
Splicing factor 3a, subunit 2 (287 aa)
     
  0.982
EDO96746
Nuclear pre-mRNA splicing factor, component of splicing factor 3b (444 aa)
     
    0.956
EDP01923
Predicted protein; Component of the U1 snRNP, which is essential for recognition of the pre-mRNA 5’ splice-site and the subsequent assembly of the spliceosome. U1-C is directly involved in initial 5’ splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5’ splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates E complex formation by stabilizing the base pairing of the 5’ end of the U1 snRNA and the 5’ splice-site region (154 aa)
     
  0.956
SMP12
U1 small nuclear ribonucleoprotein (394 aa)
     
  0.956
SMP4
Small nuclear ribonucleoprotein Sm D2 (110 aa)
     
  0.952
SPL3
SF3A3 splicing factor 3a, subunit 3 (508 aa)
     
  0.941
EDP08691
Predicted protein (233 aa)
     
  0.936
EDP01186
Predicted protein (710 aa)
     
  0.931
EDO97595
Nuclear pre-mRNA splicing factor, component of splicing factor 3b (1078 aa)
     
    0.929
Your Current Organism:
Chlamydomonas reinhardtii
NCBI taxonomy Id: 3055
Other names: C. reinhardtii, Chlamydomonadaceae, Chlamydomonadales, Chlamydomonas, Chlamydomonas reinhardtii, Chlamydomonas reinhardtii P.A.Dangeard, Chlamydomonas smithii, Chlamydomonas smithii R.W.Howshaw & H.Ettl, Chlorophyceae, Volvocales, Volvocida
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