STRINGSTRING
EDP06074 protein (Chlamydomonas reinhardtii) - STRING interaction network
"EDP06074" - Histone deacetylase in Chlamydomonas reinhardtii
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDP06074Histone deacetylase (312 aa)    
Predicted Functional Partners:
EDO99611
Hypothetical protein (1043 aa)
     
        0.630
EDO97236
Predicted protein (954 aa)
     
        0.570
EDO96475
Predicted protein (1193 aa)
     
        0.519
EDP09999
Predicted protein (424 aa)
     
        0.515
EDP00547
Predicted protein (563 aa)
     
        0.512
EDO98711
Predicted protein (230 aa)
     
        0.505
PLAP9
Plastid lipid associated protein (341 aa)
     
        0.504
EDO96419
Predicted protein (189 aa)
     
        0.502
EDP03128
Predicted protein (629 aa)
     
        0.501
EDP01316
Predicted protein (1085 aa)
     
        0.500
Your Current Organism:
Chlamydomonas reinhardtii
NCBI taxonomy Id: 3055
Other names: C. reinhardtii, Chlamydomonadaceae, Chlamydomonadales, Chlamydomonas, Chlamydomonas reinhardtii, Chlamydomonas reinhardtii P.A.Dangeard, Chlamydomonas smithii, Chlamydomonas smithii R.W.Howshaw & H.Ettl, Chlorophyceae, Volvocales, Volvocida
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