STRINGSTRING
PDXK1 protein (Chlamydomonas reinhardtii) - STRING interaction network
"PDXK1" - Pyridoxal kinase in Chlamydomonas reinhardtii
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PDXK1Pyridoxal kinase (481 aa)    
Predicted Functional Partners:
EDP02683
Predicted protein (466 aa)
   
 
  0.967
EDP06201
Predicted protein (211 aa)
     
  0.945
CPLD3
Predicted protein (392 aa)
         
  0.943
EDP03783
Predicted protein (206 aa)
     
 
    0.809
RPL9
Ribosomal protein L9 (191 aa)
           
  0.802
RPL40
Ribosomal protein L40 (128 aa)
           
  0.779
EDP00653
F-box protein (187 aa)
           
  0.712
COQ6
Flavin-dependent monoxygenase (460 aa)
     
        0.426
TPK1
Thiamine pyrophosphokinase (267 aa)
   
   
  0.424
Your Current Organism:
Chlamydomonas reinhardtii
NCBI taxonomy Id: 3055
Other names: C. reinhardtii, Chlamydomonadaceae, Chlamydomonadales, Chlamydomonas, Chlamydomonas reinhardtii, Chlamydomonas reinhardtii P.A.Dangeard, Chlamydomonas smithii, Chlamydomonas smithii R.W.Howshaw & H.Ettl, Chlorophyceae, Volvocales, Volvocida
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