STRINGSTRING
EDP06227 protein (Chlamydomonas reinhardtii) - STRING interaction network
"EDP06227" - RING finger protein in Chlamydomonas reinhardtii
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDP06227RING finger protein (705 aa)    
Predicted Functional Partners:
EDP08097
cytosine-C5 specific DNA methyltransferase (2204 aa)
   
  0.940
MCM5
Minichromosome maintenance protein 5 (718 aa)
     
        0.827
EDP08645
cytosine-C5 specific DNA methyltransferase (1263 aa)
   
  0.795
EDP01750
cytosine-C5 specific DNA methyltransferase (1663 aa)
   
  0.795
EDO99484
SNF2 superfamily protein (797 aa)
   
   
  0.778
MCM4
Minichromosome maintenance protein 4 (544 aa)
     
        0.772
POLA1
DNA polymerase alpha subunit one (1114 aa)
     
        0.765
EDP00173
chromodomain-helicase-DNA-binding protein (2000 aa)
   
   
  0.764
MCM2
Minichromosome maintenance protein 2 (887 aa)
     
        0.763
CTF18
DNA damage repair and chromosome cohesion protein (1490 aa)
     
        0.762
Your Current Organism:
Chlamydomonas reinhardtii
NCBI taxonomy Id: 3055
Other names: C. reinhardtii, Chlamydomonadaceae, Chlamydomonadales, Chlamydomonas, Chlamydomonas reinhardtii, Chlamydomonas reinhardtii P.A.Dangeard, Chlamydomonas smithii, Chlamydomonas smithii R.W.Howshaw & H.Ettl, Chlorophyceae, Volvocales, Volvocida
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