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EDP06235 protein (Chlamydomonas reinhardtii) - STRING interaction network
"EDP06235" - SWI2/SNF2-like protein in Chlamydomonas reinhardtii
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDP06235SWI2/SNF2-like protein (1286 aa)    
Predicted Functional Partners:
ARP4
Actin-related protein (458 aa)
     
  0.973
EDP07981
SWI/SNF chromatin remodeling complex protein (642 aa)
     
  0.950
EDP09315
High mobility group protein (552 aa)
     
  0.938
TOP2
DNA topoisomerase II; Control of topological states of DNA by transient breakage and subsequent rejoining of DNA strands. Topoisomerase II makes double-strand breaks (1167 aa)
     
  0.879
SET4
Histone methyltransferase (2983 aa)
     
  0.820
EDP03175
Histone methyltransferase (1708 aa)
     
  0.811
EDO98539
Histone deacetylase (339 aa)
     
  0.799
RPB2
DNA-directed RNA polymerase II, 135 kDa polypeptide; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (1634 aa)
     
  0.785
rpoB-1
RNA polymerase beta subunit I; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (822 aa)
     
  0.785
rpoB-2
RNA polymerase beta subunit II; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (626 aa)
     
  0.785
Your Current Organism:
Chlamydomonas reinhardtii
NCBI taxonomy Id: 3055
Other names: C. reinhardtii, Chlamydomonadaceae, Chlamydomonadales, Chlamydomonas, Chlamydomonas reinhardtii, Chlamydomonas reinhardtii P.A.Dangeard, Chlamydomonas smithii, Chlamydomonas smithii R.W.Howshaw & H.Ettl, Chlorophyceae, Volvocales, Volvocida
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