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SPL5 protein (Chlamydomonas reinhardtii) - STRING interaction network
"SPL5" - pre-mRNA-splicing factor in Chlamydomonas reinhardtii
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SPL5pre-mRNA-splicing factor (488 aa)    
Predicted Functional Partners:
PRP6
Splicing factor, component of the U4/U6-U5 snRNP complex (947 aa)
     
  0.992
NOP1
Nucleolar protein, component of C/D snoRNPs (315 aa)
 
  0.990
PRP8
Splicing factor, component of the U5 snRNP and of the spliceosome (2346 aa)
     
  0.989
EDP00856
Predicted protein (456 aa)
     
  0.989
EDO98295
Predicted protein (142 aa)
     
  0.988
SMP4
Small nuclear ribonucleoprotein Sm D2 (110 aa)
     
  0.982
SMP6A
U6 small ribonucleoprotein F; Probable common Sm protein, is found in U1 and U2 snRNPs and may be part of the spliceosome (89 aa)
     
  0.981
SMP8
Sm protein (97 aa)
     
  0.981
SMP9
Small nuclear ribonucleoprotein Sm D1 (114 aa)
     
  0.980
SMP11
Sm protein (100 aa)
     
  0.978
Your Current Organism:
Chlamydomonas reinhardtii
NCBI taxonomy Id: 3055
Other names: C. reinhardtii, Chlamydomonadaceae, Chlamydomonadales, Chlamydomonas, Chlamydomonas reinhardtii, Chlamydomonas reinhardtii P.A.Dangeard, Chlamydomonas smithii, Chlamydomonas smithii R.W.Howshaw & H.Ettl, Chlorophyceae, Volvocales, Volvocida
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