STRINGSTRING
EDP06379 protein (Chlamydomonas reinhardtii) - STRING interaction network
"EDP06379" - Squamosa promoter binding protein in Chlamydomonas reinhardtii
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDP06379Squamosa promoter binding protein (72 aa)    
Predicted Functional Partners:
EDP06380
Predicted protein (411 aa)
     
        0.686
EDO98747
Predicted protein (649 aa)
     
        0.513
EDP01840
Predicted protein (3607 aa)
     
        0.505
EDP08951
Predicted protein (886 aa)
     
        0.501
EDP07761
Predicted protein (287 aa)
     
        0.478
EDO96792
Predicted protein (909 aa)
     
        0.438
EDP07468
Predicted protein (122 aa)
     
        0.418
EDO96692
Predicted protein (374 aa)
     
        0.413
EDP07935
Predicted protein (1777 aa)
     
        0.411
EDP07469
Predicted protein (661 aa)
     
        0.405
Your Current Organism:
Chlamydomonas reinhardtii
NCBI taxonomy Id: 3055
Other names: C. reinhardtii, Chlamydomonadaceae, Chlamydomonadales, Chlamydomonas, Chlamydomonas reinhardtii, Chlamydomonas reinhardtii P.A.Dangeard, Chlamydomonas smithii, Chlamydomonas smithii R.W.Howshaw & H.Ettl, Chlorophyceae, Volvocales, Volvocida
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