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EDP06438 protein (Chlamydomonas reinhardtii) - STRING interaction network
"EDP06438" - Predicted protein in Chlamydomonas reinhardtii
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDP06438Predicted protein (388 aa)    
Predicted Functional Partners:
SKP1
E3 ubiquitin ligase ; Belongs to the SKP1 family (157 aa)
       
 
  0.793
RBX1
Ring-box protein (130 aa)
       
 
  0.657
RPS27a
Ribosomal protein S27a (182 aa)
       
      0.580
EDP07942
Predicted protein (238 aa)
   
        0.528
CUL1
Ubiquitin ligase SCF complex subunit cullin ; Belongs to the cullin family (725 aa)
     
 
  0.524
CUL3
Cullin ; Belongs to the cullin family (744 aa)
     
 
  0.524
EDP00682
Transcription initiation factor TFIID, subunit TAF5 (522 aa)
   
 
 
  0.510
EDP05122
Predicted protein (304 aa)
   
        0.475
CDC6
Pre-initiation complex, subunit CDC6 (940 aa)
     
 
  0.470
EDP02755
Predicted protein (381 aa)
   
      0.470
Your Current Organism:
Chlamydomonas reinhardtii
NCBI taxonomy Id: 3055
Other names: C. reinhardtii, Chlamydomonas reinhardtii, Chlamydomonas reinhardtii P.A.Dangeard, Chlamydomonas smithii, Chlamydomonas smithii R.W.Howshaw & H.Ettl, SAG 53.72 [[Chlamydomonas smithii]], SAG 54.72 [[Chlamydomonas smithii]], UTEX 90
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