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GIDA1 protein (Chlamydomonas reinhardtii) - STRING interaction network
"GIDA1" - tRNA uridine 5-carboxymethylaminomethyl modification enzyme in Chlamydomonas reinhardtii
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GIDA1tRNA uridine 5-carboxymethylaminomethyl modification enzyme (625 aa)    
Predicted Functional Partners:
EDP03710
Predicted protein (365 aa)
   
 
  0.939
EDO99160
Predicted protein; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin- like GTPase superfamily. TrmE GTPase family (465 aa)
 
 
  0.889
EDO99796
GTPase Der; GTPase that plays an essential role in the late steps of ribosome biogenesis (446 aa)
   
 
  0.830
TRM4
tRNA-(M5C) methyltransferase ; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family (392 aa)
     
   
  0.818
EDP05988
GTPase Der; GTPase that plays an essential role in the late steps of ribosome biogenesis (450 aa)
   
 
  0.810
EDP00143
tRNA pseudouridine synthase (446 aa)
   
   
  0.793
GIDB1
Methyltransferase (258 aa)
   
   
  0.753
VPS45
SM/Sec1-family protein ; Belongs to the STXBP/unc-18/SEC1 family (620 aa)
 
 
        0.702
EDO99060
Predicted protein (334 aa)
     
   
  0.668
ETFA
Electron transfer flavoprotein alpha subunit (381 aa)
     
   
  0.628
Your Current Organism:
Chlamydomonas reinhardtii
NCBI taxonomy Id: 3055
Other names: C. reinhardtii, Chlamydomonas reinhardtii, Chlamydomonas reinhardtii P.A.Dangeard, Chlamydomonas smithii, Chlamydomonas smithii R.W.Howshaw & H.Ettl, SAG 53.72 [[Chlamydomonas smithii]], SAG 54.72 [[Chlamydomonas smithii]], UTEX 90
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