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EDP06492 protein (Chlamydomonas reinhardtii) - STRING interaction network
"EDP06492" - Nuclear ribonucleoprotein in Chlamydomonas reinhardtii
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDP06492Nuclear ribonucleoprotein (356 aa)    
Predicted Functional Partners:
HNR1
Heterogeneous nuclear ribonucleoprotein (295 aa)
     
 
  0.739
PRP38
pre-mRNA splicing factor (284 aa)
     
   
  0.737
RPL36
Ribosomal protein L36, component of cytosolic 80S ribosome and 60S large subunit (98 aa)
           
  0.711
BIP2
Binding protein 2 (662 aa)
         
  0.691
SMP12
U1 small nuclear ribonucleoprotein (394 aa)
     
 
  0.682
PP1A
Protein phosphatase 1 (304 aa)
     
      0.671
CBP20
Nuclear cap-binding protein (143 aa)
     
 
  0.669
RB47
Polyadenylate-binding protein RB47; Binds the poly(A) tail of mRNA (636 aa)
     
  0.666
SMP1
Small nuclear ribonucleoprotein (127 aa)
     
   
  0.664
EDP05271
RNA processing protein (511 aa)
     
 
  0.656
Your Current Organism:
Chlamydomonas reinhardtii
NCBI taxonomy Id: 3055
Other names: C. reinhardtii, Chlamydomonadaceae, Chlamydomonadales, Chlamydomonas, Chlamydomonas reinhardtii, Chlamydomonas reinhardtii P.A.Dangeard, Chlamydomonas smithii, Chlamydomonas smithii R.W.Howshaw & H.Ettl, Chlorophyceae, Volvocales, Volvocida
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