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TRM1 protein (Chlamydomonas reinhardtii) - STRING interaction network
"TRM1" - N2,N2-dimethylguanosine tRNA methyltransferase in Chlamydomonas reinhardtii
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TRM1N2,N2-dimethylguanosine tRNA methyltransferase (410 aa)    
Predicted Functional Partners:
EDP04787
Predicted protein; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit (396 aa)
     
        0.975
EDP05821
Predicted protein (924 aa)
     
        0.938
EDP06385
Predicted protein (602 aa)
     
        0.916
UTP1
Nucleolar protein, component of the U3 processome (996 aa)
     
        0.911
EDP07113
Predicted protein; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (720 aa)
     
        0.907
NOP56
Nucleolar protein, component of C/D snoRNPs (498 aa)
 
   
  0.906
EDP03014
Predicted protein (343 aa)
     
   
  0.904
EDP03276
Predicted protein (944 aa)
     
        0.903
EDP09830
Predicted protein (461 aa)
     
        0.902
EDP04019
Predicted protein (137 aa)
     
        0.890
Your Current Organism:
Chlamydomonas reinhardtii
NCBI taxonomy Id: 3055
Other names: C. reinhardtii, Chlamydomonadaceae, Chlamydomonadales, Chlamydomonas, Chlamydomonas reinhardtii, Chlamydomonas reinhardtii P.A.Dangeard, Chlamydomonas smithii, Chlamydomonas smithii R.W.Howshaw & H.Ettl, Chlorophyceae, Volvocales, Volvocida
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