STRINGSTRING
LSP1 protein (Chlamydomonas reinhardtii) - STRING interaction network
"LSP1" - Signal transducer for phototaxis in Chlamydomonas reinhardtii
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LSP1Signal transducer for phototaxis (716 aa)    
Predicted Functional Partners:
EDO97371
Predicted protein (659 aa)
     
        0.692
EDP00042
Predicted protein (801 aa)
     
        0.650
EDP04715
Predicted protein (1209 aa)
     
        0.639
PRKDC
DNA dependent protein kinase catalytic subunit (1431 aa)
     
        0.622
SSD3
Sterol sensing domain protein (717 aa)
     
        0.614
PFK3
Phosphofructokinase (1005 aa)
     
        0.594
EDP05463
Predicted protein (223 aa)
     
        0.526
EDO98034
Predicted protein (188 aa)
     
        0.522
EDO96254
Predicted protein (820 aa)
     
        0.513
EDP04144
Predicted protein (1362 aa)
     
        0.511
Your Current Organism:
Chlamydomonas reinhardtii
NCBI taxonomy Id: 3055
Other names: C. reinhardtii, Chlamydomonadaceae, Chlamydomonadales, Chlamydomonas, Chlamydomonas reinhardtii, Chlamydomonas reinhardtii P.A.Dangeard, Chlamydomonas smithii, Chlamydomonas smithii R.W.Howshaw & H.Ettl, Chlorophyceae, Volvocales, Volvocida
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