STRINGSTRING
UPF1 protein (Chlamydomonas reinhardtii) - STRING interaction network
UPF1 protein in Chlamydomonas reinhardtii
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
UPF1UPF1 protein (800 aa)    
Predicted Functional Partners:
UPF3
UPF3 protein (371 aa)
     
  0.995
UPF2
UPF2 protein (301 aa)
     
  0.994
EDP00439
Predicted protein (225 aa)
     
  0.994
SMG1
Phosphatidylinositol 3-kinase-related protein kinase (4881 aa)
     
  0.993
EDO99548
Predicted protein (261 aa)
     
  0.932
TOR1
Target of rapamycin, growth-regulatory PI3K-like protein kinase (1696 aa)
     
  0.875
EFG3
Elongation factor-like protein (428 aa)
     
  0.861
EDP01462
Predicted protein (624 aa)
   
 
 
0.835
EDP05831
Predicted protein (156 aa)
     
  0.829
XRN1
Single-stranded RNA 5’->3’ exonuclease (171 aa)
     
 
  0.828
Your Current Organism:
Chlamydomonas reinhardtii
NCBI taxonomy Id: 3055
Other names: C. reinhardtii, Chlamydomonadaceae, Chlamydomonadales, Chlamydomonas, Chlamydomonas reinhardtii, Chlamydomonas reinhardtii P.A.Dangeard, Chlamydomonas smithii, Chlamydomonas smithii R.W.Howshaw & H.Ettl, Chlorophyceae, Volvocales, Volvocida
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