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PRP19 protein (Chlamydomonas reinhardtii) - STRING interaction network
"PRP19" - Spliceosome component, nuclear pre-mRNA splicing factor in Chlamydomonas reinhardtii
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PRP19Spliceosome component, nuclear pre-mRNA splicing factor (503 aa)    
Predicted Functional Partners:
SMP1
Small nuclear ribonucleoprotein (127 aa)
     
  0.996
EDP06331
Predicted protein (276 aa)
     
  0.995
EDP07967
Predicted protein (343 aa)
     
0.994
SMP4
Small nuclear ribonucleoprotein Sm D2 (110 aa)
     
  0.994
SPL3
SF3A3 splicing factor 3a, subunit 3 (508 aa)
     
  0.994
SMP3
Small nuclear ribonucleoprotein E (87 aa)
     
  0.994
EDP05167
Predicted protein (1378 aa)
     
  0.994
PRP17
Nuclear pre-mRNA splicing factor, component of the spliceosome (313 aa)
   
  0.994
EDP03322
Predicted protein (811 aa)
     
  0.994
XAB2
Transcription-coupled DNA repair protein (886 aa)
     
  0.993
Your Current Organism:
Chlamydomonas reinhardtii
NCBI taxonomy Id: 3055
Other names: C. reinhardtii, Chlamydomonadaceae, Chlamydomonadales, Chlamydomonas, Chlamydomonas reinhardtii, Chlamydomonas reinhardtii P.A.Dangeard, Chlamydomonas smithii, Chlamydomonas smithii R.W.Howshaw & H.Ettl, Chlorophyceae, Volvocales, Volvocida
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