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PUS4 protein (Chlamydomonas reinhardtii) - STRING interaction network
"PUS4" - tRNA pseudouridine synthase in Chlamydomonas reinhardtii
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PUS4tRNA pseudouridine synthase (287 aa)    
Predicted Functional Partners:
EDP01218
Predicted protein (181 aa)
     
   
  0.736
FAP42
Flagellar associated protein, adenylate/guanylate kinase-like protein (2457 aa)
   
   
  0.712
LCI33
low-CO2-inducible protein (886 aa)
     
        0.691
EDP00357
Predicted protein (143 aa)
     
        0.686
CBF5
Centromere/microtubule binding protein (435 aa)
   
  0.679
EDO98824
Predicted protein (207 aa)
   
  0.679
GTR12
Glycosyl transferase (3180 aa)
     
        0.678
CLR23
Predicted protein of CLR family (571 aa)
     
        0.669
EDP05143
Predicted protein (1459 aa)
     
        0.668
GUA1
GMP synthetase (535 aa)
   
   
  0.580
Your Current Organism:
Chlamydomonas reinhardtii
NCBI taxonomy Id: 3055
Other names: C. reinhardtii, Chlamydomonadaceae, Chlamydomonadales, Chlamydomonas, Chlamydomonas reinhardtii, Chlamydomonas reinhardtii P.A.Dangeard, Chlamydomonas smithii, Chlamydomonas smithii R.W.Howshaw & H.Ettl, Chlorophyceae, Volvocales, Volvocida
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