STRINGSTRING
EDP06920 protein (Chlamydomonas reinhardtii) - STRING interaction network
"EDP06920" - SNF2 superfamily protein in Chlamydomonas reinhardtii
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDP06920SNF2 superfamily protein (3251 aa)    
Predicted Functional Partners:
EDP08982
HMGB protein (513 aa)
     
 
  0.724
SET3
Histone methyltransferase (957 aa)
     
  0.697
EDP05135
SNF2 superfamily protein (1610 aa)
     
 
0.673
EDP02095
SEC7/BIG-like ARF-guanine nucleotide exchange factor (2150 aa)
     
        0.672
EDP01011
Ring3 protein (798 aa)
     
  0.657
EDP05831
Predicted protein (156 aa)
     
      0.643
EDP04794
Hypothetical protein (749 aa)
     
        0.641
SET4
Histone methyltransferase (2983 aa)
     
  0.640
EDP00159
Histone deacetylase (223 aa)
     
  0.633
EDP02641
Predicted protein (957 aa)
     
        0.626
Your Current Organism:
Chlamydomonas reinhardtii
NCBI taxonomy Id: 3055
Other names: C. reinhardtii, Chlamydomonadaceae, Chlamydomonadales, Chlamydomonas, Chlamydomonas reinhardtii, Chlamydomonas reinhardtii P.A.Dangeard, Chlamydomonas smithii, Chlamydomonas smithii R.W.Howshaw & H.Ettl, Chlorophyceae, Volvocales, Volvocida
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