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RRP40 protein (Chlamydomonas reinhardtii) - STRING interaction network
"RRP40" - 3'-5' exonuclease component of the exosome in Chlamydomonas reinhardtii
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RRP403’-5’ exonuclease component of the exosome (231 aa)    
Predicted Functional Partners:
EDP05793
Predicted protein (302 aa)
 
  0.996
EDO97018
Predicted protein (306 aa)
     
  0.995
RNPH1
3’-5’ exoribonuclease PH component of the exosome (245 aa)
   
  0.995
RRP46
Exosome complex exonuclease (242 aa)
   
  0.995
RNPH3
3’-5’ exoribonuclease PH component of the exosome (296 aa)
   
  0.994
EDP07209
Predicted protein (198 aa)
     
  0.993
EDP01505
Predicted protein (299 aa)
     
  0.989
EDP05463
Predicted protein (223 aa)
     
  0.979
RNB2
3’-5’ exoribonuclease II (699 aa)
     
  0.979
RNB1
3’-5’ exoribonuclease (1061 aa)
     
  0.979
Your Current Organism:
Chlamydomonas reinhardtii
NCBI taxonomy Id: 3055
Other names: C. reinhardtii, Chlamydomonadaceae, Chlamydomonadales, Chlamydomonas, Chlamydomonas reinhardtii, Chlamydomonas reinhardtii P.A.Dangeard, Chlamydomonas smithii, Chlamydomonas smithii R.W.Howshaw & H.Ettl, Chlorophyceae, Volvocales, Volvocida
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