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PBGD2 protein (Chlamydomonas reinhardtii) - STRING interaction network
"PBGD2" - Porphobilinogen deaminase in Chlamydomonas reinhardtii
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PBGD2Porphobilinogen deaminase (380 aa)    
Predicted Functional Partners:
ALAD
Delta-aminolevulinic acid dehydratase (390 aa)
 
  0.992
UROS
Uroporphyrinogen-iii synthase (297 aa)
   
 
  0.957
HEMA
Glutamyl-trna reductase (522 aa)
 
   
  0.863
UROD3
Uroporphyrinogen decarboxylase (398 aa)
 
 
  0.840
SUMT1
S-adenosyl-L-methionine-dependent uroporphyrinogen III methyltransferase (367 aa)
   
  0.839
UROD2
Uroporphyrinogen decarboxylase (394 aa)
 
 
  0.833
UROD1
Uroporphyrinogen-iii decarboxylase (390 aa)
 
 
  0.833
CPX2
Coproporphyrinogen III oxidase (349 aa)
   
   
  0.824
GSA
Glutamate-1-semialdehyde aminotransferase (463 aa)
 
   
  0.822
PBGD1
Porphobilinogen deaminase (349 aa)
   
   
 
0.820
Your Current Organism:
Chlamydomonas reinhardtii
NCBI taxonomy Id: 3055
Other names: C. reinhardtii, Chlamydomonadaceae, Chlamydomonadales, Chlamydomonas, Chlamydomonas reinhardtii, Chlamydomonas reinhardtii P.A.Dangeard, Chlamydomonas smithii, Chlamydomonas smithii R.W.Howshaw & H.Ettl, Chlorophyceae, Volvocales, Volvocida
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