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pgyrp protein (Chlamydomonas reinhardtii) - STRING interaction network
"pgyrp" - Proline-glycine-tyrosine rich protein in Chlamydomonas reinhardtii
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pgyrpProline-glycine-tyrosine rich protein (169 aa)    
Predicted Functional Partners:
EDP08091
Predicted protein (140 aa)
     
        0.522
EDP01761
Predicted protein (110 aa)
     
        0.512
EDP00648
Type I metacaspase (405 aa)
     
        0.511
LSD1
Zinc-finger protein Lsd1 (177 aa)
     
        0.480
PCT1
CDP-DAG synthetase (458 aa)
     
        0.475
EDP04517
Predicted protein (240 aa)
     
        0.405
Your Current Organism:
Chlamydomonas reinhardtii
NCBI taxonomy Id: 3055
Other names: C. reinhardtii, Chlamydomonadaceae, Chlamydomonadales, Chlamydomonas, Chlamydomonas reinhardtii, Chlamydomonas reinhardtii P.A.Dangeard, Chlamydomonas smithii, Chlamydomonas smithii R.W.Howshaw & H.Ettl, Chlorophyceae, Volvocales, Volvocida
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