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PDE23 protein (Chlamydomonas reinhardtii) - STRING interaction network
"PDE23" - 3',5'-cyclic-nucleotide phosphodiesterase in Chlamydomonas reinhardtii
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PDE233’,5’-cyclic-nucleotide phosphodiesterase (305 aa)    
Predicted Functional Partners:
CGK2
cGMP-dependent protein kinase (1027 aa)
     
  0.844
GSN1
Glutamate synthase, NADH-dependent (2201 aa)
     
   
  0.831
EDP05763
Predicted protein (206 aa)
     
  0.802
EDP03411
Predicted protein (252 aa)
     
  0.802
EDO98870
Predicted protein (299 aa)
     
  0.802
GSF1
Ferredoxin-dependent glutamate synthase (1552 aa)
     
   
  0.737
EDO98041
Predicted protein (236 aa)
     
      0.679
EDO98040
Predicted protein (798 aa)
     
        0.650
EDP03939
Predicted protein (160 aa)
     
 
  0.568
EDO97041
Guanylate cyclase (2062 aa)
     
 
  0.564
Your Current Organism:
Chlamydomonas reinhardtii
NCBI taxonomy Id: 3055
Other names: C. reinhardtii, Chlamydomonadaceae, Chlamydomonadales, Chlamydomonas, Chlamydomonas reinhardtii, Chlamydomonas reinhardtii P.A.Dangeard, Chlamydomonas smithii, Chlamydomonas smithii R.W.Howshaw & H.Ettl, Chlorophyceae, Volvocales, Volvocida
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