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TRM2B protein (Chlamydomonas reinhardtii) - STRING interaction network
"TRM2B" - tRNA in Chlamydomonas reinhardtii
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TRM2BtRNA (uracil-5)-methyltransferase (206 aa)    
Predicted Functional Partners:
EDP01265
Predicted protein (302 aa)
     
        0.850
PUF1
Puf protein (717 aa)
     
        0.850
EDP04787
Predicted protein; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit (396 aa)
     
        0.846
EDP03443
valyl-tRNA synthetase (574 aa)
   
   
  0.834
EDP03163
Predicted protein (514 aa)
     
        0.792
UTP1
Nucleolar protein, component of the U3 processome (996 aa)
     
        0.789
EDP00683
Predicted protein (516 aa)
     
        0.786
EDP04019
Predicted protein (137 aa)
     
        0.786
TRM1
N2,N2-dimethylguanosine tRNA methyltransferase (410 aa)
     
   
  0.771
EDP04511
Predicted protein (598 aa)
     
        0.769
Your Current Organism:
Chlamydomonas reinhardtii
NCBI taxonomy Id: 3055
Other names: C. reinhardtii, Chlamydomonadaceae, Chlamydomonadales, Chlamydomonas, Chlamydomonas reinhardtii, Chlamydomonas reinhardtii P.A.Dangeard, Chlamydomonas smithii, Chlamydomonas smithii R.W.Howshaw & H.Ettl, Chlorophyceae, Volvocales, Volvocida
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