STRINGSTRING
EDP07682 protein (Chlamydomonas reinhardtii) - STRING interaction network
"EDP07682" - Squamosa promoter binding protein in Chlamydomonas reinhardtii
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDP07682Squamosa promoter binding protein (1318 aa)    
Predicted Functional Partners:
EDO97652
Predicted protein (533 aa)
     
        0.682
CGLD17
Predicted protein (928 aa)
     
        0.664
EDP05930
Myo-inositol-1-phosphate synthase (507 aa)
     
        0.661
EDP08645
cytosine-C5 specific DNA methyltransferase (1263 aa)
     
        0.619
EDO97183
Predicted protein (131 aa)
     
        0.565
EDO97317
Predicted protein (623 aa)
     
        0.561
EDP00356
Predicted protein (65 aa)
     
        0.537
EDP00355
Predicted protein (138 aa)
     
        0.535
EDP04666
ARF/Sar1-like GTPase (289 aa)
     
        0.526
CGL40
Predicted protein (146 aa)
     
        0.524
Your Current Organism:
Chlamydomonas reinhardtii
NCBI taxonomy Id: 3055
Other names: C. reinhardtii, Chlamydomonadaceae, Chlamydomonadales, Chlamydomonas, Chlamydomonas reinhardtii, Chlamydomonas reinhardtii P.A.Dangeard, Chlamydomonas smithii, Chlamydomonas smithii R.W.Howshaw & H.Ettl, Chlorophyceae, Volvocales, Volvocida
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