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TRP1 protein (Chlamydomonas reinhardtii) - STRING interaction network
"TRP1" - Transient receptor potential ion channel protein in Chlamydomonas reinhardtii
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TRP1Transient receptor potential ion channel protein (766 aa)    
Predicted Functional Partners:
HIS3
Imidazoleglycerol-phosphate dehydratase (251 aa)
           
  0.712
LEU2
Isopropylmalate synthase (444 aa)
           
  0.711
cnapl
Nucleosome assembly protein (350 aa)
           
  0.570
PPR3
Protein with PPR repeats (160 aa)
           
  0.495
HIS5
Histidinol phosphate aminotransferase (373 aa)
           
  0.479
HMA1
Heavy metal transporting ATPase (1189 aa)
           
  0.470
CTP3
Heavy metal transporting ATPase (1041 aa)
           
  0.470
CTP1
Heavy metal transporting ATPase (1097 aa)
           
  0.467
CCB3
CPLD43 protein required for cyt b6 assembly (193 aa)
           
  0.465
CCB2
Protein required for cyt b6 assembly (310 aa)
           
  0.465
Your Current Organism:
Chlamydomonas reinhardtii
NCBI taxonomy Id: 3055
Other names: C. reinhardtii, Chlamydomonadaceae, Chlamydomonadales, Chlamydomonas, Chlamydomonas reinhardtii, Chlamydomonas reinhardtii P.A.Dangeard, Chlamydomonas smithii, Chlamydomonas smithii R.W.Howshaw & H.Ettl, Chlorophyceae, Volvocales, Volvocida
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