STRINGSTRING
MER protein (Chlamydomonas reinhardtii) - STRING interaction network
"MER" - Predicted protein in Chlamydomonas reinhardtii
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MERPredicted protein (933 aa)    
Predicted Functional Partners:
PRP8
Splicing factor, component of the U5 snRNP and of the spliceosome (2346 aa)
     
  0.989
PRP6
Splicing factor, component of the U4/U6-U5 snRNP complex (947 aa)
     
  0.979
PRP19
Spliceosome component, nuclear pre-mRNA splicing factor (503 aa)
     
  0.979
PRP17
Nuclear pre-mRNA splicing factor, component of the spliceosome (313 aa)
     
  0.977
EDP03322
Predicted protein (811 aa)
     
  0.977
EFG2
Elongation factor 2 (845 aa)
     
  0.977
XAB2
Transcription-coupled DNA repair protein (886 aa)
     
  0.976
EDP00856
Predicted protein (456 aa)
     
  0.974
SMP4
Small nuclear ribonucleoprotein Sm D2 (110 aa)
       
  0.973
SMP6A
U6 small ribonucleoprotein F; Probable common Sm protein, is found in U1 and U2 snRNPs and may be part of the spliceosome (89 aa)
     
  0.971
Your Current Organism:
Chlamydomonas reinhardtii
NCBI taxonomy Id: 3055
Other names: C. reinhardtii, Chlamydomonadaceae, Chlamydomonadales, Chlamydomonas, Chlamydomonas reinhardtii, Chlamydomonas reinhardtii P.A.Dangeard, Chlamydomonas smithii, Chlamydomonas smithii R.W.Howshaw & H.Ettl, Chlorophyceae, Volvocales, Volvocida
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