STRINGSTRING
PGM1a protein (Chlamydomonas reinhardtii) - STRING interaction network
"PGM1a" - Phosphoglycerate mutase in Chlamydomonas reinhardtii
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PGM1aPhosphoglycerate mutase (626 aa)    
Predicted Functional Partners:
PGH1
Enolase (477 aa)
   
 
  0.977
PGK1
Phosphoglycerate kinase (462 aa)
   
 
  0.973
GAPN1
Glyceraldehyde 3-phosphate dehydrogenase, nonphosphorylating (499 aa)
         
  0.939
TPIC
Triose phosphate isomerase (282 aa)
   
 
  0.938
GLYK
Glycerate kinase (351 aa)
         
    0.930
EDP04023
Predicted protein (383 aa)
       
  0.908
PGD1
D-3-phosphoglycerate dehydrogenase (587 aa)
       
  0.908
EDP03907
Predicted protein (391 aa)
       
  0.908
EDP08963
Predicted protein (733 aa)
         
    0.900
PEPC1
Phosphoenolpyruvate carboxylase, isoform 1 (471 aa)
     
 
  0.866
Your Current Organism:
Chlamydomonas reinhardtii
NCBI taxonomy Id: 3055
Other names: C. reinhardtii, Chlamydomonadaceae, Chlamydomonadales, Chlamydomonas, Chlamydomonas reinhardtii, Chlamydomonas reinhardtii P.A.Dangeard, Chlamydomonas smithii, Chlamydomonas smithii R.W.Howshaw & H.Ettl, Chlorophyceae, Volvocales, Volvocida
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