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BIOB protein (Chlamydomonas reinhardtii) - STRING interaction network
"BIOB" - Biotin synthase in Chlamydomonas reinhardtii
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BIOBBiotin synthase (58 aa)    
Predicted Functional Partners:
BIOA
Diaminopelargonic acid synthase (819 aa)
   
 
  0.949
HYDG
Hydrogenase assembly factor (567 aa)
         
  0.882
BIOF
7-keto-8-aminopelargonic acid synthase (328 aa)
   
   
  0.882
HYDEF
Iron hydrogenase assembly protein (1151 aa)
         
  0.826
HYD1
Iron hydrogenase (497 aa)
         
  0.815
EDP08299
Predicted protein (165 aa)
   
        0.782
HYD2
Iron hydrogenase (505 aa)
         
  0.740
HYD3
Iron hydrogenase/prelamin A binding protein (479 aa)
         
  0.611
EDP05600
DNA topoisomerase-like protein; Introduces a single-strand break via transesterification at a target site in duplex DNA. Releases the supercoiling and torsional tension of DNA introduced during the DNA replication and transcription by transiently cleaving and rejoining one strand of the DNA duplex. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5’-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3’-OH DNA strand (772 aa)
         
  0.549
SPT1
Component of serine palmitoyltransferase (435 aa)
   
   
  0.547
Your Current Organism:
Chlamydomonas reinhardtii
NCBI taxonomy Id: 3055
Other names: C. reinhardtii, Chlamydomonadaceae, Chlamydomonadales, Chlamydomonas, Chlamydomonas reinhardtii, Chlamydomonas reinhardtii P.A.Dangeard, Chlamydomonas smithii, Chlamydomonas smithii R.W.Howshaw & H.Ettl, Chlorophyceae, Volvocales, Volvocida
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