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EDP08353 protein (Chlamydomonas reinhardtii) - STRING interaction network
"EDP08353" - U5 snRNP-specific protein in Chlamydomonas reinhardtii
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDP08353U5 snRNP-specific protein (330 aa)    
Predicted Functional Partners:
PRP19
Spliceosome component, nuclear pre-mRNA splicing factor (503 aa)
   
0.987
PRP6
Splicing factor, component of the U4/U6-U5 snRNP complex (947 aa)
     
  0.986
EDP03322
Predicted protein (811 aa)
     
    0.985
PRP17
Nuclear pre-mRNA splicing factor, component of the spliceosome (313 aa)
   
    0.984
PRP8
Splicing factor, component of the U5 snRNP and of the spliceosome (2346 aa)
     
  0.983
EDP09592
Predicted protein (698 aa)
     
    0.981
EFG2
Elongation factor 2 (845 aa)
     
  0.976
EDP00856
Predicted protein (456 aa)
     
    0.976
EDP05779
Predicted protein (150 aa)
     
  0.973
SMP4
Small nuclear ribonucleoprotein Sm D2 (110 aa)
     
  0.972
Your Current Organism:
Chlamydomonas reinhardtii
NCBI taxonomy Id: 3055
Other names: C. reinhardtii, Chlamydomonadaceae, Chlamydomonadales, Chlamydomonas, Chlamydomonas reinhardtii, Chlamydomonas reinhardtii P.A.Dangeard, Chlamydomonas smithii, Chlamydomonas smithii R.W.Howshaw & H.Ettl, Chlorophyceae, Volvocales, Volvocida
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