STRINGSTRING
EDP08396 protein (Chlamydomonas reinhardtii) - STRING interaction network
"EDP08396" - U2 snRNP auxiliary factor, small subunit in Chlamydomonas reinhardtii
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDP08396U2 snRNP auxiliary factor, small subunit (273 aa)    
Predicted Functional Partners:
SPL8
U2 snRNP auxiliary factor, large subunit (306 aa)
     
  0.997
EDP06779
U2 snRNP auxiliary factor, large subunit (309 aa)
     
  0.995
EDO99010
Predicted protein (80 aa)
     
  0.995
SMP1
Small nuclear ribonucleoprotein (127 aa)
     
  0.870
RSZ22
SR protein factor (200 aa)
     
  0.857
SRP36
SR protein factor (320 aa)
     
  0.847
EDP09509
Predicted protein (494 aa)
     
  0.843
EDP01159
Predicted protein (170 aa)
     
  0.835
SRP35
SR protein factor (338 aa)
     
  0.831
EDP00640
Predicted protein (169 aa)
     
  0.829
Your Current Organism:
Chlamydomonas reinhardtii
NCBI taxonomy Id: 3055
Other names: C. reinhardtii, Chlamydomonadaceae, Chlamydomonadales, Chlamydomonas, Chlamydomonas reinhardtii, Chlamydomonas reinhardtii P.A.Dangeard, Chlamydomonas smithii, Chlamydomonas smithii R.W.Howshaw & H.Ettl, Chlorophyceae, Volvocales, Volvocida
Server load: low (3%) [HD]