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EDP08423 protein (Chlamydomonas reinhardtii) - STRING interaction network
"EDP08423" - Predicted protein in Chlamydomonas reinhardtii
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDP08423Predicted protein (493 aa)    
Predicted Functional Partners:
EDP05135
SNF2 superfamily protein (1610 aa)
   
  0.873
EDP08691
Predicted protein (233 aa)
     
  0.793
NOT1
Component of CCR4-NOT transcriptional regulator complex (1440 aa)
     
  0.777
PRP17
Nuclear pre-mRNA splicing factor, component of the spliceosome (313 aa)
     
    0.772
PRP19
Spliceosome component, nuclear pre-mRNA splicing factor (503 aa)
       
  0.770
CAF1
CCR4-associated factor (300 aa)
       
  0.770
EDP07967
Predicted protein (343 aa)
     
  0.768
SMPF
Small nuclear riboprotein F; Probable common Sm protein, is found in U1 and U2 snRNPs and may be part of the spliceosome (85 aa)
       
    0.767
XAB2
Transcription-coupled DNA repair protein (886 aa)
     
    0.765
PRP8
Splicing factor, component of the U5 snRNP and of the spliceosome (2346 aa)
       
  0.761
Your Current Organism:
Chlamydomonas reinhardtii
NCBI taxonomy Id: 3055
Other names: C. reinhardtii, Chlamydomonadaceae, Chlamydomonadales, Chlamydomonas, Chlamydomonas reinhardtii, Chlamydomonas reinhardtii P.A.Dangeard, Chlamydomonas smithii, Chlamydomonas smithii R.W.Howshaw & H.Ettl, Chlorophyceae, Volvocales, Volvocida
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