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NAB1 protein (Chlamydomonas reinhardtii) - STRING interaction network
"NAB1" - Nucleic acid binding protein in Chlamydomonas reinhardtii
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NAB1Nucleic acid binding protein (247 aa)    
Predicted Functional Partners:
EDP00988
AIR synthase-related protein (1403 aa)
   
      0.920
SPL3
SF3A3 splicing factor 3a, subunit 3 (508 aa)
     
  0.802
EDP08691
Predicted protein (233 aa)
       
  0.800
EDP01923
Predicted protein; Component of the U1 snRNP, which is essential for recognition of the pre-mRNA 5’ splice-site and the subsequent assembly of the spliceosome. U1-C is directly involved in initial 5’ splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5’ splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates E complex formation by stabilizing the base pairing of the 5’ end of the U1 snRNA and the 5’ splice-site region (154 aa)
       
  0.799
SMP2
Small nuclear ribonucleoprotein polypeptide G (77 aa)
     
  0.796
PRP19
Spliceosome component, nuclear pre-mRNA splicing factor (503 aa)
     
  0.792
EDP09509
Predicted protein (494 aa)
     
  0.790
EDO98006
Nuclear pre-mRNA splicing factor, component of splicing factor 3b (1085 aa)
     
  0.789
EDP00885
Predicted protein (75 aa)
       
  0.788
XAB2
Transcription-coupled DNA repair protein (886 aa)
       
  0.788
Your Current Organism:
Chlamydomonas reinhardtii
NCBI taxonomy Id: 3055
Other names: C. reinhardtii, Chlamydomonadaceae, Chlamydomonadales, Chlamydomonas, Chlamydomonas reinhardtii, Chlamydomonas reinhardtii P.A.Dangeard, Chlamydomonas smithii, Chlamydomonas smithii R.W.Howshaw & H.Ettl, Chlorophyceae, Volvocales, Volvocida
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